Eglen2016

CODE CHECK STATUS

CODE CHECK STATUS

Summary: OK

System notes:

## [1] "Linux 5bd696459fe1 4.14.57-1-MANJARO #1 SMP PREEMPT Sun Jul 22 19:25:51 UTC 2018 x86_64 GNU/Linux"

Date of execution

## [1] "Mon Aug  6 11:17:41 UTC 2018"

Introduction

This is a fully-reproducible research review. The paper was written in R using the “Rnw” format of mixed latex and R code.

Key outputs

Figure 7 of Eglen (2016) reproduced

Figure 7 of Eglen (2016) reproduced

Summary of outputs generated

Docker transcript

unlink("codecheck", recursive=TRUE) ## start with fresh directory
docker_image = system("docker run -d --name road sje30/eglen2015", intern=TRUE)
## Copy the docker outputs
system("docker cp road:/home/rstudio/codecheck .")
## Close docker
system(sprintf("docker stop %s", docker_image))
system(sprintf("docker rm %s", docker_image))
outputs = get_outputs("codecheck/")

Dockerhub log

Technical issues

  1. The original github repository was named “eglen2015” but as the paper appeared in 2016, we are using that naming scheme here.
  2. As the paper uses stochastic methods, results will not be identical, but should be similar.

References

Eglen SJ (2016) Bivariate spatial point patterns in the retina: a reproducible review. Journal de la Société Française de Statistique 157:33–48 http://journal-sfds.fr/article/view/518.