Eglen2014

CODE CHECK STATUS

CODE CHECK STATUS

Summary: OK

System notes:

## [1] "Linux 48a2567e02e9 4.14.57-1-MANJARO #1 SMP PREEMPT Sun Jul 22 19:25:51 UTC 2018 x86_64 GNU/Linux"

Date of execution

## [1] "Thu Aug  2 13:59:58 UTC 2018"

Introduction

The Izhikevich model is one of the simplest and yet most effective models of spiking neurons. In this reproducible certificate, we have reproduced Figure 1 of Izhikevich (2004). As there is no stochasticity in this system, the traces in each plot should match those from the original figure.

Summary of outputs generated

Key output

Figure 1 of Eglen et al (2014) reproduced

Figure 1 of Eglen et al (2014) reproduced

Docker transcript

docker_image = system("docker run -d --name road sje30/waverepo", intern=TRUE)
## Copy the docker outputs
opdir = paste(getwd(), "road", sep='/')
system(sprintf("docker cp road:/home/rstudio/waverepo/paper/codecheck/uname.txt %s", opdir))
system(sprintf("docker cp road:/home/rstudio/waverepo/paper/codecheck/nelec-durn-fig-1.pdf %s", opdir))
system(sprintf("docker cp road:/home/rstudio/waverepo/paper/codecheck/date.txt %s", opdir))
## Close docker
system(sprintf("docker stop %s", docker_image))
system(sprintf("docker rm %s", docker_image))

Dockerhub log

References

Eglen SJ, Weeks M, Jessop M, Simonotto J, Jackson T, Sernagor E (2014) A data repository and analysis framework for spontaneous neural activity recordings in developing retina. Gigascience 3:3 http://dx.doi.org/10.1186/2047-217X-3-3